feat: add AI fingerprint avoidance rules and fix em-dash patterns
- Add ai_fingerprint_rules.md with banned words, structural rules, and 12-item post-gen checklist - Fix Fellowships/Honors template format: --- to period separator - Fix Publications under-review template format - Update all 4 skills to load fingerprint rules during generation - Add AI scan section to critique framework - Update resume_reference and cl_reference with em-dash limits - Reduce em-dashes in example files Co-Authored-By: Akhil Peeketi <peeketiakhilreddy@gmail.com>
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**Positioning strategy:** Lead with ML pipeline development and independent protein engineering results. Emphasize broadly applicable computational skills (protein language models, MD simulations, free energy methods). Show evidence of independence (first-author papers, open-source tools) alongside collaboration (experimental validation, mentorship).
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**Differentiation angle:** Not just an MD user or an ML practitioner --- a bridge between biomolecular simulation and data-driven protein design, with production-quality software skills.
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**Differentiation angle:** Not just an MD user or an ML practitioner , a bridge between biomolecular simulation and data-driven protein design, with production-quality software skills.
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---
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**Opening hook options (pick one):**
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- Method-development hook: "My research develops ML-guided protein engineering pipelines that compress months of experimental screening into hours, enabling rapid discovery of thermostable enzymes and high-affinity binders."
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- Scale hook: "In the past two years, I have screened over 8,500 enzyme variants using protein language models I fine-tuned, identifying 5 experimentally confirmed thermostable candidates."
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- Vision hook: "The intersection of machine learning and biomolecular simulation --- where I have built my research program --- aligns closely with [Department]'s strengths in [specific area]."
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- Vision hook: "The intersection of machine learning and biomolecular simulation , where I have built my research program , aligns closely with [Department]'s strengths in [specific area]."
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**Paragraph 1 -- Research fit (3-4 sentences):**
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Connect your ML protein engineering work to the department's research strengths. Name the faculty or group if known. Reference one concrete result (e.g., 3,000x throughput, 5 confirmed hits).
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<!-- NOTE: Example bullets below show em-dashes (---) for parenthetical breaks. -->
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<!-- In actual generation, limit to max 2 em-dashes per full document. -->
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<!-- Prefer commas, semicolons, or parentheses for mid-bullet breaks. -->
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# Position: Postdoctoral Research Associate at Lakewood University
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## Dates: Aug 2023 -- Present
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