feat: add AI fingerprint avoidance rules and fix em-dash patterns

- Add ai_fingerprint_rules.md with banned words, structural rules, and
  12-item post-gen checklist
- Fix Fellowships/Honors template format: --- to period separator
- Fix Publications under-review template format
- Update all 4 skills to load fingerprint rules during generation
- Add AI scan section to critique framework
- Update resume_reference and cl_reference with em-dash limits
- Reduce em-dashes in example files

Co-Authored-By: Akhil Peeketi <peeketiakhilreddy@gmail.com>
This commit is contained in:
Akhil Reddy Peeketi
2026-03-09 05:08:57 -06:00
parent c51b49882f
commit 9a7c627cc3
12 changed files with 168 additions and 12 deletions
@@ -19,7 +19,7 @@
**Positioning strategy:** Lead with ML pipeline development and independent protein engineering results. Emphasize broadly applicable computational skills (protein language models, MD simulations, free energy methods). Show evidence of independence (first-author papers, open-source tools) alongside collaboration (experimental validation, mentorship).
**Differentiation angle:** Not just an MD user or an ML practitioner --- a bridge between biomolecular simulation and data-driven protein design, with production-quality software skills.
**Differentiation angle:** Not just an MD user or an ML practitioner , a bridge between biomolecular simulation and data-driven protein design, with production-quality software skills.
---
@@ -93,7 +93,7 @@
**Opening hook options (pick one):**
- Method-development hook: "My research develops ML-guided protein engineering pipelines that compress months of experimental screening into hours, enabling rapid discovery of thermostable enzymes and high-affinity binders."
- Scale hook: "In the past two years, I have screened over 8,500 enzyme variants using protein language models I fine-tuned, identifying 5 experimentally confirmed thermostable candidates."
- Vision hook: "The intersection of machine learning and biomolecular simulation --- where I have built my research program --- aligns closely with [Department]'s strengths in [specific area]."
- Vision hook: "The intersection of machine learning and biomolecular simulation , where I have built my research program , aligns closely with [Department]'s strengths in [specific area]."
**Paragraph 1 -- Research fit (3-4 sentences):**
Connect your ML protein engineering work to the department's research strengths. Name the faculty or group if known. Reference one concrete result (e.g., 3,000x throughput, 5 confirmed hits).
@@ -1,3 +1,7 @@
<!-- NOTE: Example bullets below show em-dashes (---) for parenthetical breaks. -->
<!-- In actual generation, limit to max 2 em-dashes per full document. -->
<!-- Prefer commas, semicolons, or parentheses for mid-bullet breaks. -->
# Position: Postdoctoral Research Associate at Lakewood University
## Dates: Aug 2023 -- Present